aDVANCES IN SYSTEMS AND SYNTHETIC BIOLOGY
Modelling Complex Biological Systems in the Context of Genomics
Thematic Research School
    March 19th to 23rd 2018, Évry  
INRIA Université d'Évry Val d'Essone Global Bioenergies

PROGRAMME

Monday March 19th 2018 - RNA and biochemical circuits engineering

08:30 - 08:45 Registration
08:45 - 09:00 Thematic School presentation
09:00 - 10:30 To Be Announced.
  Matias ZURBRIGGEN, Inst. of Synthetic Biology, U. of Düsseldorf, D
10:30 - 11:00 Coffee Break
11:00 - 12:30 Engineered riboswitches - an alternative means to control gene expression
  Beatrix SÜß, Dept of Biology, TU Darmstadt, D
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 16:00 Student workshop (I)
16:00 - 16:30 Coffee Break
16:30 - 18:00 Student workshop (II)
18:00 - 19:30 Poster Session
20:00 - 21:00 Dinner

Tuesday March 20th 2018 - Formal methods, dynamical systems

09:00 - 10:30 Intrinsic Coarse-Graining of Models of Signalling pathways
  Jérôme FÉRET, Antique team, DI - École Normale Supérieure, Paris, F
10:30 - 11:00 Coffee Break
11:00 - 12:30 Reasoning over large-scale and uncertain systems in biology
  Anne SIEGEL, Dyliss team, IRISA lab., Rennes, F
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 16:30 Workshop: BIOCHAM
  Francois FAGES, INRIA Saclay, F
16:30 - 17:00 Coffee Break
17:00 - 19:00 Workshop: Entity-centered Simulations
  Patrick AMAR, Sys2Diag, CNRS / LRI, Univ. Paris-Sud, F
17:00 - 19:00 Workshop: Basic concepts of mathematical modeling with Python (I)
  Oliver EBENHOEH, Heinrich-Heine University Düsseldorf, D
19:30 - 20:30 Dinner
21:00 - 22:00 To Be Announced.
  Anne CAMBON-THOMSEN, Épidémiologie et analyses en santé publique, INSERM / U. Toulouse, F

Wednesday March 21st 2018 - Control theory - networks

09:00 - 10:30 To Be Announced.
  Nicole RADDE, Inst. for Systems Theory and Automatic Control, U. of Stuttgart, D
10:30 - 11:00 Coffee Break
11:00 - 12:30 To Be Announced.
  Mustafa KHAMMASH, Department of Biosystems Science and Engineering, ETHZ, Zurich, CH
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 17:30 Workshop: metabolism modelling (I)
  Jean-Pierre MAZAT, Univ. Bordeaux 2, F
14:30 - 16:30 Workshop: Detecting genome regularities with GREAT
  Costas BOUYIOUKOS, Epigenetics and cell fate, Univ Paris-Diderot, F
17:00 - 19:00 Workshop: Basic concepts of mathematical modeling with Python (II)
  Oliver EBENHOEH, Heinrich-Heine University Düsseldorf, D
18:00 - 19:30 Poster Session
19:30 - 20:30 Dinner

Thursday March 22nd 2018 - Yeast modeling

09:00 - 10:30 To Be Announced.
  Speaker SIX,
10:30 - 11:00 Coffee Break
11:00 - 12:30 To Be Announced.
  Douglas MURRAY, Inst. For Advanced Biosciences, Keio U., JP
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 16:30 Workshop: Logical Approaches
  Gilles BERNOT, I3S, Univ. Nice, F
14:30 - 16:30 Workshop: FindPath and RetroPath: Solutions for in silico design of metabolic pathways
  Pablo CARBONELL & Stéphanie HEUX, iSSB, Evry, F & Synbiochem, Univ. Manchester, UK and LISBP, INSA Toulouse, F
16:30 - 17:00 Coffee Break
16:15 - 19:15 Workshop: metabolism modelling (II)
  Jean-Pierre MAZAT, Univ. Bordeaux 2, F
17:00 - 19:00 Workshop: Design of artificial gene regulation networks with fuzzy logic approach
  Morgan MADEC, Telecom Physique Strasbourg, Illkirch, F
19:30 - 21:00 Dinner

Friday March 23rd 2018 - Synthetic genomics & non-canonical biochemistry

09:00 - 10:30 To Be Announced.
  Vitor PINHEIRO, London, UK
10:30 - 11:00 Coffee Break
11:00 - 12:30 To Be Announced.
  Ned BUDISA, Technische Universität Berlin, Institut für Chemie, Berlin, D
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers